AGRP Bioinformatics Courses

Learn microbiome analysis using QIIME2. Master sequence processing, diversity analysis, and visualization techniques for understanding microbial communities.

• 16S rRNA gene sequence analysis
• Alpha and beta diversity metrics
• Statistical analysis and visualization
• Hands-on practical exercises

Comprehensive handbook covering genome assembly techniques, quality control, and best practices for both short and long-read sequencing technologies.

• Assembly algorithms and strategies
• Quality assessment and validation
• Short-read and long-read approaches
• Troubleshooting common issues

A two-day course covering essential command-line skills for bioinformatics. Learn file management, text processing, and shell scripting for genomic data analysis.

• File system navigation and management
• Text processing with awk, sed, grep
• Shell scripting fundamentals
• Bioinformatics workflow automation